更新时间：2021-06-10 19:02:32
coverpage
Title Page
About Packt
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Contributors
About the author
About the reviewers
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Preface
Who this book is for
What this book covers
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Download the example code files
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Conventions used
Sections
Getting ready
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Python and the Surrounding Software Ecology
Introduction
Installing the required software with Anaconda
How to do it...
There's more...
Installing the required software with Docker
Interfacing with R via rpy2
Performing R magic with Jupyter Notebook
Next-Generation Sequencing
Accessing GenBank and moving around NCBI databases
Performing basic sequence analysis
Working with modern sequence formats
Working with alignment data
Analyzing data in VCF
Studying genome accessibility and filtering SNP data
Processing NGS data with HTSeq
Working with Genomes
Working with high-quality reference genomes
Dealing with low-quality genome references
Traversing genome annotations
Extracting genes from a reference using annotations
