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See also
- The specification for VCF is available at http://samtools.github.io/hts-specs/VCFv4.2.pdf
- GATK is one of the most widely used variant callers; check out https://www.broadinstitute.org/gatk/ for details
- SAMtools and htslib are used for variant calling and SAM/BAM management; check out http://htslib.org for details